IL_4LSK_335

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4LSK|1|YA|U|2689, 4LSK|1|YA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LSK_335 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.121

The information below is about IL_9DFE_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4LSK|1|YA|U|2687
4LSK|1|YA|U|2688
4LSK|1|YA|U|2689
4LSK|1|YA|C|2690
4LSK|1|YA|C|2691
*
4LSK|1|YA|G|2718
4LSK|1|YA|G|2719
4LSK|1|YA|U|2720
4LSK|1|YA|A|2721
4LSK|1|YA|G|2722

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19