3D structure

PDB id
4LT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
UGUAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LT8_086 not in the Motif Atlas
Geometric match to IL_7RQB_027
Geometric discrepancy: 0.1713
The information below is about IL_7RQB_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.1
Basepair signature
cWW-L-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4LT8|1|RA|U|858
4LT8|1|RA|G|859
4LT8|1|RA|U|860
4LT8|1|RA|A|861
4LT8|1|RA|G|862
*
4LT8|1|RA|C|915
4LT8|1|RA|G|916
4LT8|1|RA|A|917
4LT8|1|RA|A|918
4LT8|1|RA|G|919

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L25
Chain R3
50S ribosomal protein L29
Chain RB
5S ribosomal RNA; 5S rRNA
Chain RQ
50S ribosomal protein L15

Coloring options:


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