3D structure

PDB id
4LT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LT8_161 not in the Motif Atlas
Homologous match to IL_7RQB_104
Geometric discrepancy: 0.0683
The information below is about IL_7RQB_104
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

4LT8|1|RA|C|2680
4LT8|1|RA|C|2681
4LT8|1|RA|U|2682
4LT8|1|RA|C|2683
4LT8|1|RA|U|2684
*
4LT8|1|RA|A|2725
4LT8|1|RA|U|2726
4LT8|1|RA|G|2727

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RE
50S ribosomal protein L3
Chain RO
50S ribosomal protein L13
Chain RR
50S ribosomal protein L16
Chain RT
50S ribosomal protein L18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2998 s