3D structure

PDB id
4LT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LT8_198 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.2989
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04211.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4LT8|1|XA|U|605
4LT8|1|XA|G|606
4LT8|1|XA|A|607
4LT8|1|XA|A|608
4LT8|1|XA|A|609
4LT8|1|XA|G|610
4LT8|1|XA|A|611
4LT8|1|XA|C|612
*
4LT8|1|XA|G|628
4LT8|1|XA|G|629
4LT8|1|XA|G|630
4LT8|1|XA|G|631
4LT8|1|XA|A|632
4LT8|1|XA|G|633

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XD
30S ribosomal protein S4
Chain XH
30S ribosomal protein S8
Chain XP
30S ribosomal protein S16

Coloring options:


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