3D structure

PDB id
4LT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LT8_202 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.0675
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

4LT8|1|XA|G|673
4LT8|1|XA|G|674
4LT8|1|XA|A|675
4LT8|1|XA|A|676
4LT8|1|XA|U|677
4LT8|1|XA|U|678
*
4LT8|1|XA|A|712
4LT8|1|XA|G|713
4LT8|1|XA|G|714
4LT8|1|XA|A|715
4LT8|1|XA|A|716
4LT8|1|XA|C|717

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XF
30S ribosomal protein S6
Chain XK
30S ribosomal protein S11
Chain XR
30S ribosomal protein S18
Chain YD
50S ribosomal protein L2

Coloring options:


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