IL_4M6D_005
3D structure
- PDB id
- 4M6D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the aptamer minF-lysozyme complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.68 Å
Loop
- Sequence
- UAAAGAGUG*CA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4M6D_005 not in the Motif Atlas
- Geometric match to IL_4M6D_012
- Geometric discrepancy: 0.1759
- The information below is about IL_4M6D_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58960.1
- Basepair signature
- cWW-L-cWW-L-tWW-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
4M6D|1|D|U|15
4M6D|1|D|A|16
4M6D|1|D|A|17
4M6D|1|D|A|18
4M6D|1|D|G|19
4M6D|1|D|A|20
4M6D|1|D|G|21
4M6D|1|D|U|22
4M6D|1|D|G|23
*
4M6D|1|D|C|44
4M6D|1|D|A|45
Current chains
- Chain D
- aptamer
Nearby chains
- Chain E
- Lysozyme C
- Chain G
- Lysozyme C
- Chain H
- aptamer
- Chain L
- aptamer
Coloring options: