IL_4NIA_005
3D structure
- PDB id
- 4NIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.82 Å
Loop
- Sequence
- AAA*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AAA,UUU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4NIA_005 not in the Motif Atlas
- Geometric match to IL_3SZX_003
- Geometric discrepancy: 0.1328
- The information below is about IL_3SZX_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
4NIA|1|X|A|161||A
4NIA|1|X|A|162||A
4NIA|1|X|A|163||A
*
4NIA|1|m|U|187||A
4NIA|1|m|U|188||A
4NIA|1|m|U|189||A
Current chains
- Chain X
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain m
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Nearby chains
- Chain 2
- RNA (5'-R(P*UP*U)-3')
- Chain C
- Coat protein
- Chain I
- Coat protein
- Chain J
- Coat protein
- Chain K
- Coat protein
- Chain M
- Coat protein
- Chain Z
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain b
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain q
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Coloring options: