IL_4NVV_041

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4NVV|1|A|U|1187, 4NVV|1|A|A|1189

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04397.1

Basepair signature

cWW-tWH-L-tHW-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4NVV|1|A|C|1064
4NVV|1|A|U|1065
4NVV|1|A|A|1066
4NVV|1|A|A|1067
4NVV|1|A|G|1068
4NVV|1|A|U|1069
4NVV|1|A|G|1070
*
4NVV|1|A|C|1185
4NVV|1|A|U|1186
4NVV|1|A|U|1187
4NVV|1|A|A|1188
4NVV|1|A|A|1189
4NVV|1|A|G|1190

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S Ribosomal Protein L36

Chain H

50S Ribosomal Protein L6

Chain N

50S Ribosomal Protein L13