#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 111-112-42-104-94-105-67-8
1 IL_1VW3_0341VW30.115311A21S ribosomal RNAA943U944A945A946G947U948G949*C1106U1107A1118U1120cWWncSWntHWcSHcWW
2 IL_4NVV_0414NVV0.07632A23S Ribosomal RNAC1064U1065A1066A1067G1068U1069G1070*C1185U1186A1188G1190cWWntWHntHWntWWcSHcWW
3 IL_1S72_0411S720.00002Kink-turn related (H)0 LSU rRNAU1115U1116A1117A1118G1119U1120G1121*C1243U1244A1246A1248cWWntHWntWWcSHcWW
4 IL_4IOA_0354IOA0.09462X LSU rRNAC1029U1030C1031A1032G1033U1034G1035*C1150U1151A1153G1155cWWntWHntHWntWWcSHcWW
5 IL_2QBG_0392QBG0.13251B23S rRNAU1018U1019A1020A1021G1022U1023G1024*C1140U1141A1142A1144cWWtWHntHWcSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUAAGUG*CUUAAUAAUAAGAAU1
CUAAGUG*CUUAAG1
UUAAGUG*CUCAAA1
CUCAGUG*CUCAAG1
UUAAGUG*CUAAA1
Non-Watson-Crick part of the motif
SequenceCounts
UAAGU*UUAAUAAUAAGAA1
UAAGU*UUAA1
UAAGU*UCAA1
UCAGU*UCAA1
UAAGU*UAA1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusNew id, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_04397.1Only in the parent motif
IL_38807.3
Compare
IL_1S72_041, IL_4IOA_035, IL_2QBG_039IL_1VW3_034, IL_4NVV_041IL_3V2F_039

Children motifs

Child motifCommon motif instancesOnly in IL_04397.1Only in the child motif
IL_04397.2
Compare
IL_1VW3_034, IL_1S72_041, IL_4IOA_035, IL_2QBG_039IL_4NVV_041IL_4QCN_038
Annotations
  • (4)
  • Kink-turn related (H) (1)
  • Basepair signature
    cWW-tWH-L-tHW-cSH-cWW
    Heat map statistics
    Min 0.08 | Avg 0.10 | Max 0.18
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