IL_4NVV_070

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4NVV|1|A|G|1832, 4NVV|1|A|G|1847, 4NVV|1|A|U|1851

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71229.1

Basepair signature

cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4NVV|1|A|U|1829
4NVV|1|A|G|1830
4NVV|1|A|C|1831
4NVV|1|A|G|1832
4NVV|1|A|A|1833
4NVV|1|A|A|1834
4NVV|1|A|C|1835
*
4NVV|1|A|G|1844
4NVV|1|A|G|1845
4NVV|1|A|A|1846
4NVV|1|A|G|1847
4NVV|1|A|G|1848
4NVV|1|A|U|1849
4NVV|1|A|A|1850
4NVV|1|A|U|1851
4NVV|1|A|A|1852

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S Ribosomal Protein L2