#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 12 131-41-132-113-103-124-95-86-7
1 IL_1S72_0651S720.25663Kink-turn related (H)0 LSU rRNAC1854G1855C1856A1858A1859U1860*A1869C1870U1871G1873U1874A1875G1877cSscWWtSstWWtHHtHHncWWcWW
2 IL_1VW3_0531VW30.22363A21S ribosomal RNAU1705G1706C1707G1709A1710A1711*U1721U1722A1723G1725U1726A1727A1729cSscWWntSstWWtHHtHHtHScWW
3 IL_4NVV_0704NVV0.09563A23S Ribosomal RNAU1829G1830C1831A1833A1834C1835*G1844G1845A1846G1848U1849A1850A1852cSscWWtSstWWtHHtHHtHScWW
4 IL_2QBG_0712QBG0.08713B23S rRNAU1798G1799C1800A1802A1803C1804*G1813G1814A1815G1817U1818A1819A1821cSscWWntSstWWtHHtHHtHScWW
5 IL_4IOA_0654IOA0.00003Kink-turn related (H)X LSU rRNAU1789G1790C1791A1793A1794C1795*G1805G1806A1807G1809U1810A1811A1813cSscWWntSsntWWntHHtHHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGCAAAU*ACUCGUACG1
UGCAGAA*UUAAGUAUA1
UGCGAAC*GGAGGUAUA1
UGCAAAC*GGACGUAUA1
UGCCAAC*GGACGUAUA1
Non-Watson-Crick part of the motif
SequenceCounts
GCAAA*CUCGUAC1
GCAGA*UAAGUAU1
GCGAA*GAGGUAU1
GCAAA*GACGUAU1
GCCAA*GACGUAU1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusNew id, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_71229.1Only in the parent motif
IL_98591.3
Compare
IL_4IOA_065, IL_1S72_065, IL_2QBG_071IL_1VW3_053, IL_4NVV_070IL_3V2F_067

Children motifs

Child motifCommon motif instancesOnly in IL_71229.1Only in the child motif
IL_71229.2
Compare
IL_4IOA_065, IL_1VW3_053, IL_1S72_065, IL_2QBG_071IL_4NVV_070IL_4QCN_066
Annotations
  • (3)
  • Kink-turn related (H) (2)
  • Basepair signature
    cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.15 | Max 0.27
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