Motif IL_71229.1 Version IL_71229.1 of this group appears in releases 1.14 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-4 | 1-13 | 2-11 | 3-10 | 3-12 | 4-9 | 5-8 | 6-7 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_065 | 1S72 | 0.2566 | 3 | Kink-turn related (H) | 0 | LSU rRNA | C | 1854 | G | 1855 | C | 1856 | A | 1858 | A | 1859 | U | 1860 | * | A | 1869 | C | 1870 | U | 1871 | G | 1873 | U | 1874 | A | 1875 | G | 1877 | cSs | cWW | tSs | tWW | tHH | tHH | ncWW | cWW |
2 | IL_1VW3_053 | 1VW3 | 0.2236 | 3 | A | 21S ribosomal RNA | U | 1705 | G | 1706 | C | 1707 | G | 1709 | A | 1710 | A | 1711 | * | U | 1721 | U | 1722 | A | 1723 | G | 1725 | U | 1726 | A | 1727 | A | 1729 | cSs | cWW | ntSs | tWW | tHH | tHH | tHS | cWW | |
3 | IL_4NVV_070 | 4NVV | 0.0956 | 3 | A | 23S Ribosomal RNA | U | 1829 | G | 1830 | C | 1831 | A | 1833 | A | 1834 | C | 1835 | * | G | 1844 | G | 1845 | A | 1846 | G | 1848 | U | 1849 | A | 1850 | A | 1852 | cSs | cWW | tSs | tWW | tHH | tHH | tHS | cWW | |
4 | IL_2QBG_071 | 2QBG | 0.0871 | 3 | B | 23S rRNA | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | * | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | cSs | cWW | ntSs | tWW | tHH | tHH | tHS | cWW | |
5 | IL_4IOA_065 | 4IOA | 0.0000 | 3 | Kink-turn related (H) | X | LSU rRNA | U | 1789 | G | 1790 | C | 1791 | A | 1793 | A | 1794 | C | 1795 | * | G | 1805 | G | 1806 | A | 1807 | G | 1809 | U | 1810 | A | 1811 | A | 1813 | cSs | cWW | ntSs | ntWW | ntHH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCAAAU*ACUCGUACG | 1 |
UGCAGAA*UUAAGUAUA | 1 |
UGCGAAC*GGAGGUAUA | 1 |
UGCAAAC*GGACGUAUA | 1 |
UGCCAAC*GGACGUAUA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCAAA*CUCGUAC | 1 |
GCAGA*UAAGUAU | 1 |
GCGAA*GAGGUAU | 1 |
GCAAA*GACGUAU | 1 |
GCCAA*GACGUAU | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_71229.1 | Only in the parent motif |
---|---|---|---|
IL_98591.3 Compare | IL_4IOA_065, IL_1S72_065, IL_2QBG_071 | IL_1VW3_053, IL_4NVV_070 | IL_3V2F_067 |
Children motifs
Child motif | Common motif instances | Only in IL_71229.1 | Only in the child motif |
---|---|---|---|
IL_71229.2 Compare | IL_4IOA_065, IL_1VW3_053, IL_1S72_065, IL_2QBG_071 | IL_4NVV_070 | IL_4QCN_066 |
- Annotations
-
- (3)
- Kink-turn related (H) (2)
- Basepair signature
- cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.15 | Max 0.27
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