IL_4NXM_010

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4NXM|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_010 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.078

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4NXM|1|A|G|148
4NXM|1|A|A|149
4NXM|1|A|C|150
4NXM|1|A|A|151
4NXM|1|A|A|152
4NXM|1|A|C|153
*
4NXM|1|A|G|168
4NXM|1|A|C|169
4NXM|1|A|U|170
4NXM|1|A|A|171
4NXM|1|A|A|172
4NXM|1|A|U|173
4NXM|1|A|C|174

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20