IL_4NXM_066

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

4NXM|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_066 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2425

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4NXM|1|A|C|43
4NXM|1|A|G|44
4NXM|1|A|U|45
*
4NXM|1|A|G|396
4NXM|1|A|A|397
4NXM|1|A|C|398
4NXM|1|A|G|399

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S16