IL_4NXM_071

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUGCAU*AUG(2MG)

Length

10 nucleotides

Bulged bases

4NXM|1|A|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_071 not in the Motif Atlas

Homologous match to IL_5J7L_362

Geometric discrepancy: 0.2773

The information below is about IL_5J7L_362

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49612.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4NXM|1|A|C|1051
4NXM|1|A|U|1052
4NXM|1|A|G|1053
4NXM|1|A|C|1054
4NXM|1|A|A|1055
4NXM|1|A|U|1056
*
4NXM|1|A|A|1204
4NXM|1|A|U|1205
4NXM|1|A|G|1206
4NXM|1|A|2MG|1207

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14