IL_4NXM_077

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

(5MC)ACGCC*GGCGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_077 not in the Motif Atlas

Homologous match to IL_6CZR_369

Geometric discrepancy: 0.539

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4NXM|1|A|5MC|1407
4NXM|1|A|A|1408
4NXM|1|A|C|1409
4NXM|1|A|G|1410
4NXM|1|A|C|1411
4NXM|1|A|C|1412
*
4NXM|1|A|G|1488
4NXM|1|A|G|1489
4NXM|1|A|C|1490
4NXM|1|A|G|1491
4NXM|1|A|A|1492
4NXM|1|A|A|1493
4NXM|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12