IL_4NXM_078

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_078 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3784

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4NXM|1|A|C|1412
4NXM|1|A|A|1413
4NXM|1|A|U|1414
4NXM|1|A|G|1415
4NXM|1|A|G|1416
*
4NXM|1|A|C|1484
4NXM|1|A|U|1485
4NXM|1|A|G|1486
4NXM|1|A|G|1487
4NXM|1|A|G|1488

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12