IL_4NXN_021

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_021 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.219

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4NXN|1|A|G|450
4NXN|1|A|A|451
4NXN|1|A|A|452
4NXN|1|A|A|453
4NXN|1|A|C|454
4NXN|1|A|C|455
*
4NXN|1|A|G|477
4NXN|1|A|A|478
4NXN|1|A|C|479
4NXN|1|A|U|480
4NXN|1|A|G|481
4NXN|1|A|A|482
4NXN|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16