3D structure

PDB id
4NXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4NXN|1|A|A|532, 4NXN|1|A|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4NXN_023 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1311
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4NXN|1|A|G|515
4NXN|1|A|PSU|516
4NXN|1|A|G|517
4NXN|1|A|C|518
4NXN|1|A|C|519
4NXN|1|A|A|520
4NXN|1|A|G|521
*
4NXN|1|A|C|528
4NXN|1|A|G|529
4NXN|1|A|G|530
4NXN|1|A|U|531
4NXN|1|A|A|532
4NXN|1|A|A|533
4NXN|1|A|U|534
4NXN|1|A|A|535
4NXN|1|A|C|536

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
ribosomal protein S3
Chain D
ribosomal protein S4
Chain L
ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1126 s
Application loaded.