IL_4NXN_039

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4NXN|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_039 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1494

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4NXN|1|A|G|933
4NXN|1|A|C|934
4NXN|1|A|A|935
*
4NXN|1|A|U|1380
4NXN|1|A|U|1381
4NXN|1|A|C|1382
4NXN|1|A|C|1383
4NXN|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9