IL_4NXN_047

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4NXN|1|A|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_047 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.2352

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4NXN|1|A|C|1060
4NXN|1|A|G|1061
*
4NXN|1|A|C|1195
4NXN|1|A|U|1196
4NXN|1|A|G|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain E

ribosomal protein S5

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14