IL_4NXN_056

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

4NXN|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_056 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1257

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4NXN|1|A|C|1399
4NXN|1|A|5MC|1400
4NXN|1|A|G|1401
*
4NXN|1|A|C|1501
4NXN|1|A|A|1502
4NXN|1|A|A|1503
4NXN|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains