IL_4NXN_069

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_069 not in the Motif Atlas

Geometric match to IL_7VYX_002

Geometric discrepancy: 0.3953

The information below is about IL_7VYX_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4NXN|1|A|G|1401
4NXN|1|A|4OC|1402
4NXN|1|A|C|1403
4NXN|1|A|5MC|1404
*
4NXN|1|A|G|1497
4NXN|1|A|UR3|1498
4NXN|1|A|A|1499
4NXN|1|A|A|1500
4NXN|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains