IL_4NXN_070

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

(5MC)GU(5MC)*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_070 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1961

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4NXN|1|A|5MC|1404
4NXN|1|A|G|1405
4NXN|1|A|U|1406
4NXN|1|A|5MC|1407
*
4NXN|1|A|G|1494
4NXN|1|A|U|1495
4NXN|1|A|C|1496
4NXN|1|A|G|1497

Current chains

Chain A

16S rRNA

Nearby chains