IL_4OX9_019

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4OX9_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1034

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4OX9|1|A|G|450
4OX9|1|A|A|451
4OX9|1|A|A|452
4OX9|1|A|A|453
4OX9|1|A|C|454
4OX9|1|A|C|455
*
4OX9|1|A|G|477
4OX9|1|A|A|478
4OX9|1|A|C|479
4OX9|1|A|U|480
4OX9|1|A|G|481
4OX9|1|A|A|482
4OX9|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16