3D structure

PDB id
4OX9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4OX9_048 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.0787
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

4OX9|1|A|U|1247
4OX9|1|A|A|1248
4OX9|1|A|C|1249
4OX9|1|A|A|1250
4OX9|1|A|A|1251
4OX9|1|A|A|1252
4OX9|1|A|G|1253
*
4OX9|1|A|C|1284
4OX9|1|A|A|1285
4OX9|1|A|A|1286
4OX9|1|A|A|1287
4OX9|1|A|A|1288
4OX9|1|A|A|1289
4OX9|1|A|G|1290

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z
Chain V
30S ribosomal protein Thx

Coloring options:


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