IL_4OX9_053

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4OX9|1|A|C|1400, 4OX9|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4OX9_053 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0848

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4OX9|1|A|C|1399
4OX9|1|A|C|1400
4OX9|1|A|G|1401
*
4OX9|1|A|C|1501
4OX9|1|A|A|1502
4OX9|1|A|A|1503
4OX9|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains