IL_4P3E_005

3D structure

PDB id

4P3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

4P3E|1|A|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P3E_005 not in the Motif Atlas

Homologous match to IL_1MFQ_005

Geometric discrepancy: 0.3195

The information below is about IL_1MFQ_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

4P3E|1|A|G|175
4P3E|1|A|A|176
4P3E|1|A|G|177
*
4P3E|1|A|C|220
4P3E|1|A|C|221

Current chains

Chain A

SRP RNA (124-mer)

Nearby chains

Chain C

Signal recognition particle subunit SRP68