4P3E Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4P3E_001 | 1/A/146:151 | GNRA variation | homologous HL_1MFQ_001 HL_34789.5 | |
| HL_4P3E_002 | 1/A/197:202 | GNRA | homologous HL_1MFQ_002 HL_34789.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4P3E_008 | 1/A/116:122, 1/A/228:235 | No text annotation | ||
| IL_4P3E_001 | 1/A/116:123, 1/A/227:235 | No text annotation | ||
| IL_4P3E_003 | 1/A/132:134, 1/A/163:165 | Isolated non-canonical cWW pair | homologous IL_1MFQ_003 IL_01003.5 | |
| IL_4P3E_004 | 1/A/138:141, 1/A/156:159 | Tandem non-canonical cWW pairs | homologous IL_1MFQ_004 IL_15225.3 | |
| IL_4P3E_005 | 1/A/175:177, 1/A/220:221 | Single bulged A | homologous IL_1MFQ_005 IL_14190.3 | |
| IL_4P3E_006 | 1/A/181:187, 1/A/212:216 | No text annotation | ||
| IL_4P3E_007 | 1/A/190:195, 1/A/204:209 | tSH-tWH-tHS-cWW | homologous IL_1MFQ_007 IL_35186.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4P3E_002 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4P3E_001 | 1/A/128:129, 1/A/168:175, 1/A/221:222 | No text annotation | geometric J3_1MFQ_002 J3_36023.1 |
Problematic loops
No problematic loops
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