IL_4P3S_001

3D structure

PDB id

4P3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P3S_001 not in the Motif Atlas

Geometric match to IL_5Z1I_001

Geometric discrepancy: 0.0743

The information below is about IL_5Z1I_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4P3S|1|A|G|5
4P3S|1|A|U|6
4P3S|1|A|C|7
*
4P3S|1|B|G|42
4P3S|1|B|U|43
4P3S|1|B|C|44

Current chains

Chain A

5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Chain B

5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Nearby chains