IL_4P6F_019

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1142

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4P6F|1|QA|G|450
4P6F|1|QA|A|451
4P6F|1|QA|A|452
4P6F|1|QA|A|453
4P6F|1|QA|C|454
4P6F|1|QA|C|455
*
4P6F|1|QA|G|477
4P6F|1|QA|A|478
4P6F|1|QA|C|479
4P6F|1|QA|U|480
4P6F|1|QA|G|481
4P6F|1|QA|A|482
4P6F|1|QA|C|483

Current chains

Chain QA

16S ribosomal RNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9