3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4P6F_026 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.3173
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04211.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4P6F|1|QA|U|605
4P6F|1|QA|G|606
4P6F|1|QA|A|607
4P6F|1|QA|A|608
4P6F|1|QA|A|609
4P6F|1|QA|G|610
4P6F|1|QA|A|611
4P6F|1|QA|C|612
*
4P6F|1|QA|G|628
4P6F|1|QA|G|629
4P6F|1|QA|G|630
4P6F|1|QA|G|631
4P6F|1|QA|A|632
4P6F|1|QA|G|633

Current chains

Chain QA
16S ribosomal RNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QH
30S ribosomal protein S8
Chain QP
30S ribosomal protein S16

Coloring options:


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