3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4P6F_047 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.0766
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12056.1
Basepair signature
cWW-L-R-R-bif-cWW
Number of instances in this motif group
2

Unit IDs

4P6F|1|QA|U|1247
4P6F|1|QA|A|1248
4P6F|1|QA|C|1249
4P6F|1|QA|A|1250
4P6F|1|QA|A|1251
4P6F|1|QA|A|1252
4P6F|1|QA|G|1253
*
4P6F|1|QA|C|1284
4P6F|1|QA|A|1285
4P6F|1|QA|A|1286
4P6F|1|QA|A|1287
4P6F|1|QA|A|1288
4P6F|1|QA|A|1289
4P6F|1|QA|G|1290

Current chains

Chain QA
16S ribosomal RNA

Nearby chains

Chain QG
30S ribosomal protein S7
Chain QI
30S ribosomal protein S9
Chain QJ
30S ribosomal protein S10
Chain QN
30S ribosomal protein S14 type Z
Chain QU
30S ribosomal protein Thx

Coloring options:


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