IL_4P6F_050

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_050 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.2009

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4P6F|1|QA|C|1260
4P6F|1|QA|A|1261
4P6F|1|QA|C|1262
*
4P6F|1|QA|G|1273
4P6F|1|QA|G|1274

Current chains

Chain QA

16S ribosomal RNA

Nearby chains

Chain QU

30S ribosomal protein Thx