3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAC*GG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4P6F_050 not in the Motif Atlas
Geometric match to IL_4LFB_054
Geometric discrepancy: 0.2009
The information below is about IL_4LFB_054
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_34520.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
58

Unit IDs

4P6F|1|QA|C|1260
4P6F|1|QA|A|1261
4P6F|1|QA|C|1262
*
4P6F|1|QA|G|1273
4P6F|1|QA|G|1274

Current chains

Chain QA
16S ribosomal RNA

Nearby chains

Chain QU
30S ribosomal protein Thx

Coloring options:


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