IL_4P6F_092

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4P6F|1|RA|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_092 not in the Motif Atlas

Homologous match to IL_5J7L_275

Geometric discrepancy: 0.469

The information below is about IL_5J7L_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29366.1

Basepair signature

cWW-cWW

Number of instances in this motif group

266

Unit IDs

4P6F|1|RA|G|880
4P6F|1|RA|G|881
*
4P6F|1|RA|U|895
4P6F|1|RA|A|896
4P6F|1|RA|C|897

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RZ

50S ribosomal protein L25