Motif IL_29366.1 Version IL_29366.1 of this group appears in releases 3.2 to 3.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_2XXA_005	2XXA	0.5652	1		F	SSRP RNA	G	71	U	73	*	A	26	C	27	cWW	cWW
2	IL_4O26_001	4O26	0.4843	1	Single bulged U	E	Telomerase TR	G	181	C	183	*	G	193	C	194	cWW	cWW
3	IL_4Y4O_224	4Y4O	0.4357	1	Single bulged A	2A	LSU rRNA	G	1219	C	1221	*	G	1229	C	1230	cWW	cWW
4	IL_4V8P_201	4V8P	0.4356	1	Single bulged G (H)	D1	LSU rRNA	A	1009	U	1011	*	A	1126	U	1127	cWW	cWW
5	IL_4WF9_030	4WF9	0.4613	1	Single bulged U	X	LSU rRNA	A	969	U	971	*	A	897	U	898	cWW	cWW
6	IL_4LFB_002	4LFB	0.4896	1	Single bulged A	A	SSU rRNA	G	396	C	398	*	G	44	U	45	cWW	cWW
7	IL_4Y4O_242	4Y4O	0.4690	1	Single bulged A	2A	LSU rRNA	G	1980	C	1982	*	G	1770	C	1771	cWW	cWW
8	IL_4V5O_109	4V5O	0.4911	1		BA	SSU rRNA	G	550	C	552	*	G	580	C	581	cWW	cWW
9	IL_4V8P_193	4V8P	0.4827	1	Single bulged A (H)	D1	LSU rRNA	A	853	U	854	*	A	920	U	922	cWW	cWW
10	IL_4V9F_025	4V9F	0.5805	1	Single bulged A	0	LSU rRNA	A	788	C	789	*	G	856	U	858	cWW	cWW
11	IL_5J7L_261	5J7L	0.5752	1	Single bulged A	DA	LSU rRNA	G	697	C	698	*	G	763	C	765	cWW	cWW
12	IL_5J7L_298	5J7L	0.5792	1	Single bulged U	DA	LSU rRNA	G	1450	C	1451	*	G	1459	C	1461	cWW	cWW
13	IL_5J7L_279	5J7L	0.5244	1	Single bulged U	DA	LSU rRNA	G	1149	C	1150	*	G	1011	C	1013	cWW	cWW
14	IL_4Y4O_215	4Y4O	0.5206	1	Single bulged U	2A	LSU rRNA	G	1149	C	1150	*	G	1011	C	1013	cWW	cWW
15	IL_4V8P_259	4V8P	0.4620	1	Single bulged A (H)	D1	LSU rRNA	A	2614	U	2616	*	G	2603	U	2604	cWW	cWW
16	IL_5J7L_312	5J7L	0.5135	1	Single bulged A	DA	LSU rRNA	G	1980	U	1982	*	G	1770	C	1771	cWW	cWW
17	IL_4IOA_064	4IOA	0.5463	1	Single bulged A	X	LSU rRNA	G	1963	U	1965	*	G	1761	C	1762	cWW	cWW
18	IL_4WF9_068	4WF9	0.4955	1	Single bulged A	X	LSU rRNA	G	2007	U	2009	*	G	1797	C	1798	cWW	cWW
19	IL_2OIU_001	2OIU	0.3532	1		P	L1 Ribozyme RNA Ligase	G	18	U	20	*	A	41	C	42	cWW	cWW
20	IL_4WF9_038	4WF9	0.3319	1	Single bulged U	X	LSU rRNA	U	1193	U	1194	*	A	1055	A	1057	cWW	cWW
21	IL_4V88_414	4V88	0.4092	1	Single bulged U	A6	SSU rRNA	G	557	C	559	*	G	586	C	587	cWW	cWW
22	IL_4V9F_013	4V9F	0.3337	1	Single bulged U	0	LSU rRNA	G	307	C	309	*	G	322	C	323	cWW	cWW
23	IL_4V8P_168	4V8P	0.3380	1	Single bulged U (H)	D1	LSU rRNA	G	189	U	191	*	A	204	C	205	cWW	cWW
24	IL_4V5O_104	4V5O	0.3354	1		BA	SSU rRNA	G	450	A	452	*	U	439	C	440	cWW	cWW
25	IL_1U9S_001	1U9S	0.4069	1	Single bulged A	A	RIBONUCLEASE P	G	107	C	109	*	G	95	C	96	cWW	cWW
26	IL_2PJP_001	2PJP	0.3758	1	Single bulged U	B	SECIS RNA	G	16	U	18	*	A	29	C	30	cWW	cWW
27	IL_5F5H_002	5F5H	0.4044	1	Single bulged C	D	RNA (21-mer)	G	18	U	20	*	A	4	C	5	cWW	cWW
28	IL_5F5H_001	5F5H	0.3830	1	Single bulged C	C	RNA (21-mer)	G	18	U	20	*	A	4	C	5	cWW	cWW
29	IL_1DUQ_002	1DUQ	0.3819	1	Single bulged A	B+A	THE REV BINDING ELEMENT	G	120	C	122	*	G	108	C	109	cWW	cWW
30	IL_1CSL_002	1CSL	0.4048	1	Single bulged A	B+A	RNA (15-mer)	G	67	C	69	*	G	50	C	51	cWW	cWW
31	IL_2OIU_003	2OIU	0.3814	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	G	18	U	20	*	A	41	C	42	cWW	cWW
32	IL_1U9S_008	1U9S	0.3510	1	Stack outside cWW	A	RIBONUCLEASE P	G	217	C	219	*	G	195	C	196	cWW	cWW
33	IL_3W3S_004	3W3S	0.4184	1	Single bulged C	B	Selenocysteine transfer RNA	G	11\|\|\|\|43_455	C	12\|\|\|\|43_455	*	G	23\|\|\|\|43_455	C	24\|\|\|\|43_455	cWW	cWW
34	IL_3W3S_001	3W3S	0.4184	1	Single bulged C	B	Selenocysteine transfer RNA	G	11	C	12	*	G	23	C	24	cWW	cWW
35	IL_4V8P_149	4V8P	0.4372	1	Single bulged U (H)	C2	5.8S rRNA	G	90	C	92	*	G	71	C	72	cWW	cWW
36	IL_3SNP_003	3SNP	0.4295	1	Single bulged C	D	ferritin H IRE RNA	G	7	U	9	*	A	24	C	25	cWW	cWW
37	IL_4IOA_011	4IOA	0.4357	1	Single bulged A	X	LSU rRNA	G	600	C	602	*	G	678	C	679	cWW	cWW
38	IL_4C7O_001	4C7O	0.5138	1	Single bulged U	E	SRP RNA	U	7	C	8	*	G	38	A	40	cWW	cWW
39	IL_4V9F_026	4V9F	0.4817	1	Single bulged G	0	LSU rRNA	A	793	U	794	*	A	819	U	821	cWW	cWW
40	IL_4V8P_258	4V8P	0.4202	1		D1	LSU rRNA	A	2561	U	2563	*	A	2557	U	2558	cWW	cWW
41	IL_3P49_003	3P49	0.4613	1		A	Glycine riboswitch	A	30	C	31	*	G	13	U	15	cWW	cWW
42	IL_5J7L_311	5J7L	0.4990	1	Single bulged C	DA	LSU rRNA	C	1727	C	1728	*	G	1731	G	1733	cWW	ncWW
43	IL_3SUX_004	3SUX	0.5176	1	Single bulged G	X	THF riboswitch	G	76\|\|\|\|17_555	U	78\|\|\|\|17_555	*	G	20\|\|\|\|17_555	C	21\|\|\|\|17_555	cWW	cWW
44	IL_3SUX_001	3SUX	0.5176	1	Single bulged G	X	THF riboswitch	G	76	U	78	*	G	20	C	21	cWW	cWW
45	IL_4LVW_002	4LVW	0.5150	1	Single bulged G	A	THF riboswitch	G	67	U	69	*	G	17	C	18	cWW	cWW
46	IL_4IOA_016	4IOA	0.4754	1	Single bulged G	X	LSU rRNA	U	715	U	716	*	G	741	A	743	cWW	cWW
47	IL_5J7L_262	5J7L	0.4484	1	Single bulged G	DA	LSU rRNA	U	702	U	703	*	G	728	A	730	cWW	cWW
48	IL_4WF9_023	4WF9	0.4023	1	Single bulged G	X	LSU rRNA	U	747	U	748	*	G	773	A	775	cWW	cWW
49	IL_4V88_401	4V88	0.4977	1	Single bulged U	A6	SSU rRNA	C	275	C	276	*	G	279	G	281	cWW	cWW
50	IL_3OXE_001	3OXE	0.4063	1	Single bulged A	A	domain II of glycine riboswitch	U	27	C	28	*	G	12	A	14	cWW	cWW
51	IL_4WF9_022	4WF9	0.4136	1	Single bulged A	X	LSU rRNA	U	742	C	743	*	G	808	A	810	cWW	cWW
52	IL_4Y4O_235	4Y4O	0.3686	1	Single bulged A	2A	LSU rRNA	C	1450\|\|\|A	C	1451	*	G	1459	G	1461	cWW	cWW
53	IL_4IOA_015	4IOA	0.3174	1	Single bulged A	X	LSU rRNA	C	710	C	711	*	G	776	G	778	cWW	cWW
54	IL_4Y4O_196	4Y4O	0.3268	1	Single bulged A	2A	LSU rRNA	C	697	C	698	*	G	763	G	765	cWW	cWW
55	IL_4IOA_034	4IOA	0.2934	1	Single bulged U	X	LSU rRNA	C	1160	U	1161	*	A	1022	G	1024	cWW	cWW
56	IL_3V7E_001	3V7E	0.3263	1	Single bulged A	C	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
57	IL_4V8P_282	4V8P	0.2978	1		D1	LSU rRNA	U	3179	C	3180	*	G	3158	A	3160	cWW	cWW
58	IL_4R0D_008	4R0D	0.2990	1		A	Group II catalytic intron	U	161	C	162	*	G	312	A	314	ncWW	cWW
59	IL_4V5O_150	4V5O	0.2896	1		BA	SSU rRNA	G	1343	A	1345	*	U	1322	C	1323	cWW	cWW
60	IL_1NBS_005	1NBS	0.2949	1	Single bulged A	B	RNase P class B	G	129	C	131	*	G	113	C	114	cWW	cWW
61	IL_3DHS_002	3DHS	0.2537	1		A	RNase P RNA	G	51	C	53	*	G	395	C	396	cWW	cWW
62	IL_4LFB_014	4LFB	0.1976	1	Single bulged U	A	SSU rRNA	U	367	C	369	*	G	392	A	393	cWW	cWW
63	IL_4V8P_253	4V8P	0.2393	1	Single bulged U (H)	D1	LSU rRNA	A	2799	C	2800	*	G	2404	U	2406	cWW	cWW
64	IL_4V9F_029	4V9F	0.2328	1	Single bulged U	0	LSU rRNA	C	847	C	848	*	G	834	G	836	cWW	cWW
65	IL_4IOA_002	4IOA	0.3147	1	Single bulged A	X	LSU rRNA	G	454	C	456	*	G	36	C	37	cWW	cWW
66	IL_4Y4O_180	4Y4O	0.3197	1	Single bulged A	2A	LSU rRNA	G	442	C	444	*	G	36	C	37	cWW	cWW
67	IL_5J7L_246	5J7L	0.2563	1	Single bulged A	DA	LSU rRNA	G	442	C	444	*	G	36	C	37	cWW	cWW
68	IL_4WF9_002	4WF9	0.2729	1	Single bulged A	X	LSU rRNA	G	488	C	490	*	G	36	C	37	cWW	cWW
69	IL_4V8P_147	4V8P	0.4029	1	Single bulged A (H)	D1+C2	LSU rRNA	G	336	C	338	*	G	28	U	29	cWW	cWW
70	IL_4V88_442	4V88	0.3448	1	Single bulged G	A6	SSU rRNA	G	1149	A	1151	*	U	1627	U	1628	cWW	cWW
71	IL_4JGN_006	4JGN	0.3212	0		E	RNA (20-mer)	U	503	G	504	*	C	520\|\|\|\|4_555	U	521\|\|\|\|4_555	cWw	cWW
72	IL_5J7L_040	5J7L	0.2634	1	Single bulged G	AA	SSU rRNA	G	925	G	927	*	U	1390	U	1391	cWW	cWW
73	IL_2PN3_003	2PN3	0.1642	1	Single bulged U	B+A	RNA (20-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
74	IL_4AOB_001	4AOB	0.2062	1	Single bulged A	A	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
75	IL_4AOB_006	4AOB	0.2062	1	Single bulged A	A	SAM-I riboswitch	G	13\|\|\|\|7_555	G	15\|\|\|\|7_555	*	C	40\|\|\|\|7_555	C	41\|\|\|\|7_555	cWW	cWW
76	IL_4V9F_107	4V9F	0.1206	1	Single bulged U	9	5S rRNA	G	86	G	88	*	C	95	C	96	cWW	cWW
77	IL_4LFB_042	4LFB	0.1419	1	Single bulged U	A	SSU rRNA	G	1048	G	1050	*	C	1208	C	1209	cWW	cWW
78	IL_4V5O_142	4V5O	0.1595	1	Single bulged U (H)	BA	SSU rRNA	G	1240	G	1242	*	C	1411	C	1412	cWW	cWW
79	IL_5AOX_002	5AOX	0.1465	1	Single bulged A	C	ALU JO CONSENSUS RNA	G	56	G	58	*	C	108	C	109	cWW	cWW
80	IL_4V88_449	4V88	0.1785	1	Single bulged U	A6	SSU rRNA	G	1268	G	1270	*	C	1440	C	1441	cWW	cWW
81	IL_2ZY6_002	2ZY6	0.1873	1	Single bulged U	A	phenylalanyl transfer RNA	G	10	G	12	*	C	24	C	25	cWW	cWW
82	IL_5LYS_006	5LYS	0.1612	2	Stack outside cWW	B	7SK RNA	G	70	G	73	*	C	36	C	37	cWW	cWW
83	IL_4V8P_217	4V8P	0.2074	1	Single bulged U (H)	D1	LSU rRNA	G	1234	G	1236	*	C	1323	C	1324	cWW	cWW
84	IL_1JZV_002	1JZV	0.1897	1	Single bulged A	B+A	RNA (9-mer)	U	12	C	14	*	G	4	A	5	cWW	cWW
85	IL_4V9F_079	4V9F	0.1594	1	Single bulged A	0	LSU rRNA	U	2290	C	2292	*	G	2279	A	2280	cWW	cWW
86	IL_1U63_004	1U63	0.2024	1	Single bulged A	D	49 NT FRAGMENT OF MRNA FOR L1	G	28	A	30	*	U	16	C	17	cWW	cWW
87	IL_4V88_407	4V88	0.1003	1	Single bulged U	A6	SSU rRNA	U	439	A	441	*	U	463	A	464	cWW	cWW
88	IL_5J7L_001	5J7L	0.1275	1	Single bulged G	AA	SSU rRNA	U	30	A	32	*	U	552	A	553	cWW	cWW
89	IL_4LFB_001	4LFB	0.0937	1	Single bulged G	A	SSU rRNA	U	30	A	32	*	U	552	A	553	cWW	cWW
90	IL_2VPL_002	2VPL	0.2106	1	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	G	28	A	30	*	U	16	C	17	cWW	cWW
91	IL_5J7L_046	5J7L	0.1903	1	Single bulged U	AA	SSU rRNA	G	1048	G	1050	*	C	1208	C	1209	cWW	cWW
92	IL_4RZD_001	4RZD	0.1596	1	Single bulged C	A	PreQ1-III riboswitch	G	78	G	80	*	C	56	C	57	cWW	cWW
93	IL_2A64_003	2A64	0.1814	1	Single bulged U	A	ribonuclease P RNA	G	66	G	68	*	C	77	C	78	cWW	cWW
94	IL_3W3S_002	3W3S	0.1593	1	Single bulged U	B	Selenocysteine transfer RNA	G	43	G	44	*	C	26	C	27	cWW	cWW
95	IL_3W3S_005	3W3S	0.1593	1	Single bulged U	B	Selenocysteine transfer RNA	G	43\|\|\|\|43_455	G	44\|\|\|\|43_455	*	C	26\|\|\|\|43_455	C	27\|\|\|\|43_455	cWW	cWW
96	IL_4V8P_242	4V8P	0.2277	1	Single bulged A (H)	D1	LSU rRNA	G	2318	G	2320	*	C	2124	C	2125	cWW	cWW
97	IL_4V5O_134	4V5O	0.2560	1	Single bulged G (H)	BA	SSU rRNA	G	1122	A	1124	*	U	1599	U	1600	ncWW	cWW
98	IL_387D_001	387D	0.2437	2	Multiple bulged bases	A	RNA Pseudoknot	G	15	A	18	*	U	1	C	2	cWW	cWW
99	IL_4IOA_057	4IOA	0.2549	1	Single bulged C	X	LSU rRNA	G	1488	U	1490	*	A	1534	C	1535	cWW	cWW
100	IL_4V8P_230	4V8P	0.3146	1	Single bulged C (H)	D1	LSU rRNA	G	1804	G	1806	*	U	1693	C	1694	cWW	cWW
101	IL_3DHS_003	3DHS	0.2225	1		A	RNase P RNA	G	66	G	68	*	C	77	C	78	cWW	cWW
102	IL_4V8P_289	4V8P	0.1665	1		D1	LSU rRNA	A	3297	G	3299	*	C	3320	U	3321	cWW	cWW
103	IL_5J7L_002	5J7L	0.1957	1	Single bulged A	AA	SSU rRNA	C	396	U	398	*	A	44	G	45	cWW	cWW
104	IL_4C7O_004	4C7O	0.2121	1	Single bulged G	E	SRP RNA	U	27	U	29	*	A	15	A	16	cWW	cWW
105	IL_4P43_002	4P43	0.2093	1	Single bulged A	B+A	RNA (23-mer)	A	40	G	42	*	C	7	U	8	cWW	cWW
106	IL_4P43_003	4P43	0.2197	1	Single bulged A	A+B	RNA (23-mer)	A	17	G	19	*	C	30	U	31	cWW	cWW
107	IL_1XOK_002	1XOK	0.2559	2	Major groove intercalation	B+A	alfalfa mosaic virus RNA 3' UTR	G	877	G	880	*	C	868	C	869	cWW	cWW
108	IL_4V5O_105	4V5O	0.2991	1	Single bulged A (H)	BA	SSU rRNA	C	498	U	500	*	A	473	G	474	cWW	cWW
109	IL_1XOK_001	1XOK	0.2797	2	Major groove intercalation	A	alfalfa mosaic virus RNA 3' UTR	A	864	G	867	*	C	846	U	847	cWW	cWW
110	IL_5LYS_007	5LYS	0.2775	2	Major groove intercalation	B	7SK RNA	A	39	G	42	*	C	67	U	68	cWW	cWW
111	IL_5FJC_001	5FJC	0.2417	1	Single bulged A	A	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
112	IL_1ET4_002	1ET4	0.3361	1	Major groove intercalation	A	RNA APTAMER, 35-MER	G	226	G	228	*	C	218	C	219	cWW	cWW
113	IL_4PHY_002	4PHY	0.3192	1	Single bulged A	B+A	RNA (20-mer)	G	38	G	40	*	C	12	C	13	cWW	cWW
114	IL_4IOA_067	4IOA	0.3765	2	Multiple bulged bases	X	LSU rRNA	U	1881	A	1884	*	U	1833	G	1834	cWW	cWW
115	IL_4WF9_071	4WF9	0.3730	2	Major groove intercalation	X	LSU rRNA	U	1925	A	1928	*	U	1868	G	1869	cWW	cWW
116	IL_4V5O_091	4V5O	0.3260	2	Multiple bulged bases (H)	BA	SSU rRNA	U	109	U	112	*	A	291	G	292	cWW	cWW
117	IL_5J7L_275	5J7L	0.2479	1	Single bulged A (H)	DA	LSU rRNA	U	895	C	897	*	G	880	G	881	cWW	cWW
118	IL_1KUQ_002	1KUQ	0.2910	1	Single bulged C	B	16S RIBOSOMAL RNA FRAGMENT	C	46	C	48	*	G	21	G	22	cWW	cWW
119	IL_4V8P_163	4V8P	0.3228	1		D1	LSU rRNA	U	260	C	262	*	G	158	G	159	cWW	cWW
120	IL_4R0D_005	4R0D	0.2534	1		A	Group II catalytic intron	U	121	C	123	*	G	148	G	149	ncWW
121	IL_4V8P_274	4V8P	0.1737	1	Single bulged A (H)	D1	LSU rRNA	C	2958	G	2960	*	C	2948	G	2949	cWW	cWW
122	IL_4V9F_090	4V9F	0.1612	1	Single bulged A	0	LSU rRNA	C	2636	G	2638	*	C	2626	G	2627	cWW	cWW
123	IL_3MEI_001	3MEI	0.1784	1	Single bulged U	B+A	RNA (23-mer)	C	15	G	17	*	C	7	G	8	cWW	cWW
124	IL_5J7L_344	5J7L	0.1861	1	Single bulged A	DA	LSU rRNA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
125	IL_4V8P_150	4V8P	0.2081	1		C2+D1	5.8S rRNA + LSU rRNA	G	147	G	149	*	C	6	C	7	cWW	cWW
126	IL_4PHY_004	4PHY	0.2875	1	Single bulged A	A+B	RNA (26-MER) + RNA (20-mer)	C	20	C	22	*	G	30	G	31	ncWW	cWW
127	IL_3IVK_001	3IVK	0.5153	1	Single bulged C	M	class I ligase product	G	46	U	48	*	A	112	C	113	ncWW	cWW
128	IL_4V5O_133	4V5O	0.4967	1	Single bulged A (H)	BA	SSU rRNA	U	1602	C	1604	*	G	1119	A	1120	ncWW	cWW
129	IL_5J7L_039	5J7L	0.4104	1	Single bulged A	AA	SSU rRNA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
130	IL_4LFB_035	4LFB	0.4301	1	Single bulged A	A	SSU rRNA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
131	IL_4V88_441	4V88	0.4210	1	Single bulged A	A6	SSU rRNA	U	1630	C	1632	*	G	1146	A	1147	cWW	cWW
132	IL_4V88_392	4V88	0.3394	2	Multiple bulged bases	A6	SSU rRNA	U	113	U	116	*	A	300	A	301	cWW	cWW
133	IL_5WTK_001	5WTK	0.3449	2	Multiple bulged bases	B	RNA (58-MER)	G	20	U	23	*	A	3	C	4	cWW	cWW
134	IL_3HHN_003	3HHN	0.3593	1	Single bulged C	E	Class I ligase ribozyme, self-ligation product	G	46	U	48	*	A	112	C	113	cWW	cWW
135	IL_2A64_002	2A64	0.4222	1	Single bulged U	A	ribonuclease P RNA	G	51	C	53	*	G	395	C	396	cWW	cWW
136	IL_4V88_399	4V88	0.3658	1	Single bulged A	A6	SSU rRNA	A	265	U	267	*	A	288	U	289	cWW	cWW
137	IL_2R8S_004	2R8S	0.3466	1	Single bulged U	R	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	131	*	A	192	C	193	cWW	cWW
138	IL_5T83_004	5T83	0.3518	2	Multiple bulged bases	A	Guanidine-I riboswitch	G	33	C	36	*	G	22	C	23	cWW	cWW
139	IL_4V9F_002	4V9F	0.3898	1	Single bulged A	0	LSU rRNA	G	448	C	450	*	G	33	C	34	cWW	cWW
140	IL_4V88_409	4V88	0.3965	1	Single bulged A	A6	SSU rRNA	A	505	U	507	*	A	481	U	482	cWW	cWW
141	IL_2XXA_003	2XXA	0.4012	1		F	SSRP RNA	G	82	C	84	*	G	17	C	18	cWW	cWW
142	IL_4V8P_209	4V8P	0.4213	2		D1	LSU rRNA	U	1101	C	1104	*	G	1111	A	1112	cWW	cWW
143	IL_3IGI_004	3IGI	0.4330	1	Single bulged G	A	Group IIC intron	U	82	U	84	*	A	99	A	100	cWW	cWW
144	IL_5J7L_271	5J7L	0.3514	1	Single bulged G	DA	LSU rRNA	U	913	C	915	*	G	862	A	863	cWW	cWW
145	IL_4V9F_098	4V9F	0.3854	1	Single bulged A	0	LSU rRNA	C	2895	C	2897	*	G	2860	G	2861	cWW	cWW
146	IL_3Q1Q_004	3Q1Q	0.3060	2		B	RNase P RNA	C	205	C	208	*	G	108	G	109	cWW	cWW
147	IL_3IWN_003	3IWN	0.5533	1	Major groove intercalation	A	C-di-GMP riboswitch	C	42	C	44	*	G	81	G	82	cWW	cWW
148	IL_3MXH_003	3MXH	0.4895	1	Major groove intercalation	R	c-di-GMP riboswitch	C	52	C	54	*	G	86	G	87	cWW	cWW
149	IL_1U9S_006	1U9S	0.5617	1	Major groove intercalation	A	RIBONUCLEASE P	U	158	C	160	*	G	140	G	141	ncWW	cWW
150	IL_5KPY_001	5KPY	0.5728	1	Single bulged C	A	5-hydroxytryptophan RNA aptamer	U	25	G	27	*	C	43	A	44	cWW	cWW
151	IL_1NTA_002	1NTA	0.5260	5	Major groove intercalation	A+B	RNA (22-mer) + RNA (18-mer)	C	7	G	13	*	C	113	G	114	cWW	cWW
152	IL_5J7L_005	5J7L	0.5538	2	Multiple bulged bases	AA	SSU rRNA	C	63	A	66	*	U	103	G	104	cWW	cWW
153	IL_5J7L_302	5J7L	0.5179	1	Single bulged A	DA	LSU rRNA	C	1489	G	1491	*	C	1499	G	1500	cWW	cWW
154	IL_4IOA_101	4IOA	0.5049	1	Single bulged G	X	LSU rRNA	U	2853	C	2855	*	G	2813	G	2814	cWW	cWW
155	IL_4Y4O_283	4Y4O	0.4208	1	Single bulged C	2A	LSU rRNA	U	2878	C	2880	*	G	2838	G	2839	cWW	cWW
156	IL_5LYS_008	5LYS	0.4145	1	Single bulged U	B	7SK RNA	C	62	G	64	*	C	45	G	46	cWW	cWW
157	IL_4V9F_067	4V9F	0.4138	2	Major groove intercalation	0	LSU rRNA	U	1939	A	1942	*	U	1897	G	1898	cWW	cWW
158	IL_5J7L_315	5J7L	0.3852	2	Major groove intercalation	DA	LSU rRNA	U	1898	A	1901	*	U	1841	G	1842	cWW	cWW
159	IL_5J7L_334	5J7L	0.3451	1	Single bulged U	DA	LSU rRNA	U	2401	C	2403	*	G	2414	G	2415	cWW	cWW
160	IL_3MXH_004	3MXH	0.3352	2	Multiple bulged bases	R	c-di-GMP riboswitch	U	81	C	84	*	G	56	G	57	cWW	cWW
161	IL_1FUF_003	1FUF	0.3784	2	Multiple bulged bases	B+A	RNA (14-mer)	U	19	C	22	*	G	9	G	10	cWW	cWW
162	IL_1FUF_002	1FUF	0.3710	2	Multiple bulged bases	A+B	RNA (14-mer)	U	5	C	8	*	G	23	G	24	cWW	cWW
163	IL_3D0U_005	3D0U	0.4316	1	Single bulged G	A	Lysine Riboswitch RNA	U	106	G	108	*	C	81	G	82	cWW	ncWW
164	IL_4IOA_084	4IOA	0.4591	1	Major groove platform	X	LSU rRNA	U	2380	C	2382	*	G	2393	G	2394	cWW	cWW
165	IL_4V8P_180	4V8P	0.3991	1		D1	LSU rRNA	U	484	C	486	*	G	493	G	494	cWW	cWW
166	IL_3DIL_005	3DIL	0.3736	1	Single bulged G	A	RNA (174-MER)	U	109	C	111	*	G	84	G	85	cWW	cWW
167	IL_4V9F_010	4V9F	0.3517	1	Single bulged G	0	LSU rRNA	U	374	C	376	*	G	274	G	275	cWW	cWW
168	IL_3IWN_004	3IWN	0.3587	2	Multiple bulged bases	A	C-di-GMP riboswitch	U	76	C	79	*	G	46	G	47	cWW	cWW
169	IL_4Y4O_210	4Y4O	0.3433	1	Single bulged A	2A	LSU rRNA	U	895	C	897	*	G	880	G	881	cWW	cWW
170	IL_4LFB_016	4LFB	0.3136	1	Single bulged G	A	SSU rRNA	U	387	A	389	*	U	375	G	376	cWW	cWW
171	IL_5J7L_019	5J7L	0.2557	1	Single bulged G	AA	SSU rRNA	U	387	A	389	*	U	375	G	376	cWW	cWW
172	IL_4WF9_088	4WF9	0.2919	1	Single bulged U	X	LSU rRNA	U	2428	C	2430	*	G	2441	G	2442	cWW	cWW
173	IL_4LFB_007	4LFB	0.2889	2	Multiple bulged bases	A	SSU rRNA	U	129	C	131	*	G	231	G	232	cWW	cWW
174	IL_4LFB_036	4LFB	0.3108	1	Single bulged G	A	SSU rRNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
175	IL_3TZR_002	3TZR	0.2141	1	Single bulged U	A+B	RNA (20-mer) + RNA (16-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
176	IL_4V8P_214	4V8P	0.2375	1	Single bulged U (H)	D1	LSU rRNA	U	1351	U	1352	*	A	1207	G	1209	cWW	cWW
177	IL_4FRG_002	4FRG	0.1993	1	Single bulged U	B	cobalamin riboswitch aptamer domain	C	39	C	40	*	G	23	G	25	cWW	cWW
178	IL_2C4Q_001	2C4Q	0.1725	1	Single bulged A	R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
179	IL_2C4Q_005	2C4Q	0.1725	1	Single bulged A	R	RNA (19-mer)	C	14\|\|\|\|P_P	C	15\|\|\|\|P_P	*	G	5\|\|\|\|P_P	G	7\|\|\|\|P_P
180	IL_4Y4O_253	4Y4O	0.1472	1	Single bulged U	2A	LSU rRNA	C	2442	C	2443	*	G	2067	G	2069	cWW	cWW
181	IL_2IZN_001	2IZN	0.2095	1	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_1	C	7\|\|\|\|P_1	*	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	cWW	cWW
182	IL_2IZN_005	2IZN	0.2095	1	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_P	C	7\|\|\|\|P_P	*	G	14\|\|\|\|P_P	G	15\|\|\|\|P_P
183	IL_4P3U_002	4P3U	0.2417	1	Single bulged A	B+A	RNA (23-mer)	A	40	G	42	*	C	7	U	8	ncWW	cWW
184	IL_4V5O_110	4V5O	0.1491	1		BA	SSU rRNA	C	552	U	554	*	A	579	G	580	cWW	cWW
185	IL_4P3U_005	4P3U	0.1641	1	Single bulged A	B+A	RNA (23-mer)	C	30	U	31	*	A	17	G	19	cWW	cWW
186	IL_1R3E_002	1R3E	0.1706	3	Multiple bulged bases	E+D	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
187	IL_3D2V_001	3D2V	0.1610	1	Single bulged U	A	TPP riboswitch (THI element)	G	73	G	75	*	C	5	C	6	cWW	cWW
188	IL_3WBM_001	3WBM	0.1955	1	Single bulged U	X+Y	RNA (25-MER)	G	2	A	4	*	U	23	C	24	cWW	cWW
189	IL_2UWM_003	2UWM	0.1904	1	Single bulged U	D	RNA (23-mer)	C	21	G	22	*	C	25	G	27	cWW	cWW
190	IL_1R3E_001	1R3E	0.1810	3	Multiple bulged bases	E+D	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
191	IL_4MCF_001	4MCF	0.1585	0		D+B	Gas5 GREM Rev	U	10	G	11	*	C	9	U	10	ncwW	cWW
192	IL_4V8P_188	4V8P	0.1472	1	Single bulged A (H)	D1	LSU rRNA	C	776	C	777	*	G	804	G	806	cWW	cWW
193	IL_1I9X_002	1I9X	0.1182	1	Single bulged A	B+A	RNA (13-mer)	U	4	A	6	*	U	9	A	10	cWW	cWW
194	IL_1S03_002	1S03	0.1238	1	Single bulged C	A	47-MER	G	9	G	11	*	C	39	C	40	cWW	cWW
195	IL_3SN2_001	3SN2	0.1468	1	Single bulged C	B	transferrin receptor iron regulatory element B RNA	U	7	G	9	*	C	24	A	25	cWW	cWW
196	IL_1S03_006	1S03	0.0979	1	Single bulged C	B	47-MER	G	9	G	11	*	C	39	C	40	cWW	cWW
197	IL_4KZD_006	4KZD	0.0769	2	Stack outside cWW	R	RNA (84-MER)	G	49	G	52	*	C	30	C	31	cWW	cWW
198	IL_1DQH_001	1DQH	0.0000	1	Single bulged C	B+A	RNA (10-mer)	U	15	G	17	*	C	3	A	4	cWW	cWW
199	IL_4P3U_011	4P3U	0.1091	1	Single bulged A	C+D	RNA (23-mer)	A	17	G	19	*	C	30	U	31	cWW	cWW
200	IL_3NDB_004	3NDB	0.1722	1	Single bulged G	M	SRP RNA	C	239	C	241	*	G	137	G	138	ncWW	cWW
201	IL_4ANG_001	4ANG	0.1849	1		R	RNA (20-mer)	C	15\|\|A\|\|P_1	U	16\|\|A\|\|P_1	*	A	5\|\|A\|\|P_1	G	7\|\|A\|\|P_1	cWW	cWW
202	IL_4ANG_003	4ANG	0.1849	1		R	RNA (20-mer)	C	15\|\|A\|\|P_P	U	16\|\|A\|\|P_P	*	A	5\|\|A\|\|P_P	G	7\|\|A\|\|P_P
203	IL_4P3U_008	4P3U	0.1488	1	Single bulged A	C+D	RNA (23-mer)	C	7	U	8	*	A	40	G	42	cWW	cWW
204	IL_1SI3_002	1SI3	0.3163	0		B	RNA (9-mer)	C	406\|\|\|\|4_675	U	407\|\|\|\|4_675	*	C	401	G	402	cWW	cWW
205	IL_4V5O_102	4V5O	0.1832	1		BA	SSU rRNA	U	431	G	433	*	C	455	A	456	cWW	cWW
206	IL_1NTA_001	1NTA	0.2121	1	Stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	5	C	7	*	G	114	G	115	cWW	cWW
207	IL_4LGT_002	4LGT	0.2449	1	Single bulged A	E	stem-loop of 23S rRNA	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
208	IL_4V88_384	4V88	0.2057	1	Single bulged C	A6	SSU rRNA	U	24	A	26	*	U	600	A	601	cWW	cWW
209	IL_4V5O_095	4V5O	0.2107	1		BA	SSU rRNA	G	181	G	183	*	C	192	C	193	cWW	cWW
210	IL_4V8P_151	4V8P	0.2332	1	Single bulged A (H)	C3	5S rRNA	U	15	A	16	*	U	62	A	64	cWW	cWW
211	IL_6MSF_001	6MSF	0.2513	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	*	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	cWW	cWW
212	IL_6MSF_003	6MSF	0.2513	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_P	G	13\|\|\|\|P_P	*	C	2\|\|\|\|P_P	C	4\|\|\|\|P_P
213	IL_5U30_001	5U30	0.2762	0		B	sgRNA	G	0	G	1	*	C	11	A	12	cWW	cWW
214	IL_3NDB_005	3NDB	0.2496	1	Single bulged U	M	SRP RNA	C	139	C	141	*	G	237	G	238	cWW	cWW
215	IL_4V9F_074	4V9F	0.2403	1	Single bulged U	0	LSU rRNA	C	2477	U	2478	*	A	2108	G	2110	cWW	cWW
216	IL_4WF9_080	4WF9	0.2339	1	Single bulged U	X	LSU rRNA	C	2469	C	2470	*	G	2094	G	2096	cWW	cWW
217	IL_4IOA_075	4IOA	0.2373	1	Single bulged U	X	LSU rRNA	C	2421	C	2422	*	G	2050	G	2052	cWW	cWW
218	IL_4V8P_167	4V8P	0.2110	2		D1	LSU rRNA	C	177	U	178	*	A	240	G	243	cWW	cWW
219	IL_3DIL_001	3DIL	0.2600	1	Single bulged C	A	RNA (174-MER)	C	78	C	79	*	G	12	G	14	cWW	cWW
220	IL_3D0U_001	3D0U	0.2319	1	Single bulged C	A	Lysine Riboswitch RNA	C	75	C	76	*	G	9	G	11	cWW	cWW
221	IL_4V9F_039	4V9F	0.2524	1	Single bulged U	0	LSU rRNA	C	1253	C	1254	*	G	1108	G	1110	cWW	cWW
222	IL_1S03_005	1S03	0.2192	1	Single bulged U	B	47-MER	C	41	U	42	*	A	6	G	8	cWW	cWW
223	IL_4FRN_004	4FRN	0.2865	1		B	Cobalamin riboswitch aptamer domain	G	23	G	25	*	C	39	C	40	cWW	cWW
224	IL_4V8P_234	4V8P	0.2365	1		D1	LSU rRNA	U	1758	G	1760	*	C	1733	A	1734	ncWW	cWW
225	IL_3MJA_001	3MJA	0.2310	1	Single bulged A	B	Domain 3 of the cricket paralysis virus intergenic region IRES RNA	C	6194	G	6195	*	C	6181	G	6183	cWW	cWW
226	IL_4V5O_145	4V5O	0.2334	1	Single bulged A (H)	BA	SSU rRNA	C	1252	G	1253	*	C	1397	G	1399	cWW	cWW
227	IL_1I9X_001	1I9X	0.1507	1	Single bulged A	A+B	RNA (13-mer)	U	4	A	6	*	U	9	A	10	cWW	cWW
228	IL_1DQF_001	1DQF	0.1404	1	Single bulged C	B+A	RNA (10-mer)	U	15	G	17	*	C	3	A	4	cWW	cWW
229	IL_4V88_439	4V88	0.2084	1	Single bulged U	A6	SSU rRNA	G	1051	G	1053	*	C	1066	C	1067	cWW	cWW
230	IL_4WF9_006	4WF9	0.2909	1	Single bulged A	X	LSU rRNA	C	175	G	177	*	C	152	G	153	cWW	cWW
231	IL_5DE8_001	5DE8	0.2544	1	Single bulged G	A	sc1	C	5	G	7	*	C	30	G	31	cWW	cWW
232	IL_5DEA_002	5DEA	0.2351	1	Single bulged G	C	sc1	C	5	G	7	*	C	30	G	31	cWW	cWW
233	IL_5J7L_017	5J7L	0.2306	1	Single bulged U	AA	SSU rRNA	U	367	G	369	*	C	392	A	393	cWW	cWW
234	IL_5J7L_049	5J7L	0.2931	1	Single bulged A	AA	SSU rRNA	U	1060	G	1061	*	C	1195	A	1197	cWW	cWW
235	IL_4LFB_046	4LFB	0.3016	1	Single bulged U	A	SSU rRNA	C	1060	G	1061	*	C	1195	G	1197	cWW	cWW
236	IL_4V8P_196	4V8P	0.2520	1	Single bulged U (H)	D1	LSU rRNA	C	911	G	912	*	C	898	G	900	cWW	cWW
237	IL_4R4V_003	4R4V	0.3050	1	Single bulged A	A	VS ribozyme RNA	C	651	G	653	*	C	766	G	767	cWW	cWW
238	IL_4R4V_009	4R4V	0.3050	1	Single bulged A	A	VS ribozyme RNA	C	651\|\|\|\|7_556	G	653\|\|\|\|7_556	*	C	766\|\|\|\|7_556	G	767\|\|\|\|7_556	cWW	cWW
239	IL_1MFQ_005	1MFQ	0.3717	1	Single bulged A	A	SRP RNA	G	175	G	177	*	C	220	C	221	cWW	cWW
240	IL_4V8P_263	4V8P	0.3716	1		D1	LSU rRNA	C	2760	U	2762	*	A	2774	G	2775	cWW	cWW
241	IL_1NBS_009	1NBS	0.3735	2	Major groove intercalation	B	RNase P class B	U	228	A	231	*	U	181	G	182	cWW	cWW
242	IL_4R4V_010	4R4V	0.2775	1	Single bulged A	A	VS ribozyme RNA	U	712\|\|\|\|7_556	G	714\|\|\|\|7_556	*	C	660\|\|\|\|7_556	A	661\|\|\|\|7_556	cWW	cWW
243	IL_4R4V_004	4R4V	0.2775	1	Single bulged A	A	VS ribozyme RNA	U	712	G	714	*	C	660	A	661	cWW	cWW
244	IL_4KZD_001	4KZD	0.2369	1	Single bulged U	R	RNA (84-MER)	C	74	G	76	*	C	10	G	11	cWW	cWW
245	IL_4WF9_035	4WF9	0.2531	1	Single bulged C	X	LSU rRNA	C	1038	A	1040	*	U	1203	G	1204	cWW	cWW
246	IL_5J7L_276	5J7L	0.2799	1	Single bulged C	DA	LSU rRNA	C	994	A	996	*	U	1159	G	1160	cWW	cWW
247	IL_1U9S_003	1U9S	0.2898	2	Major groove intercalation	A	RIBONUCLEASE P	C	224	A	227	*	U	116	G	117	cWW	cWW
248	IL_4V8P_246	4V8P	0.2811	1		D1	LSU rRNA	C	2199	G	2201	*	C	2232	G	2233	cWW	cWW
249	IL_4IOA_031	4IOA	0.2333	1	Single bulged C	X	LSU rRNA	U	1005	A	1007	*	U	1170	A	1171	cWW	cWW
250	IL_4Y4O_212	4Y4O	0.2487	1	Single bulged C	2A	LSU rRNA	C	994	A	996	*	U	1159	G	1160	cWW	cWW
251	IL_4V9F_064	4V9F	0.2110	1	Single bulged A	0	LSU rRNA	C	2021	G	2023	*	C	1826	G	1827	cWW	cWW
252	IL_4V88_452	4V88	0.2400	1	Single bulged A	A6	SSU rRNA	C	1426	G	1428	*	C	1280	G	1281	cWW	cWW
253	IL_2QUX_002	2QUX	0.2507	1	Single bulged A	F	RNA (25-MER)	C	5	G	7	*	C	20	G	21	cWW	cWW
254	IL_4V8P_208	4V8P	0.2832	1		D1	LSU rRNA	G	1094	G	1096	*	U	1117	C	1118	cWW	cWW
255	IL_4WF9_103	4WF9	0.3843	2	Multiple bulged bases	X	LSU rRNA	U	2722	U	2723	*	A	2738	G	2741	cWW	cWW
256	IL_5J7L_349	5J7L	0.3681	2	Multiple bulged bases	DA	LSU rRNA	U	2695	U	2696	*	A	2711	G	2714	cWW	cWW
257	IL_4V8P_279	4V8P	0.4083	2	Multiple bulged bases (H)	D1	LSU rRNA	U	3052	U	3053	*	A	3066	G	3069	cWW	cWW
258	IL_4V8P_281	4V8P	0.4133	1		D1	LSU rRNA	U	3247	C	3248	*	G	3144	G	3146	cWW	cWW
259	IL_4R0D_019	4R0D	0.4285	2		A	Group II catalytic intron	U	558	G	559	*	C	572	G	575	cWW	cWW
260	IL_3IGI_013	3IGI	0.4857	2	Multiple bulged bases	A	Group IIC intron	U	365	A	366	*	U	375	G	378	cWW	cWW
261	IL_4C7O_003	4C7O	0.4972	1	Single bulged C	E	SRP RNA	C	12	G	13	*	C	31	G	33	cWW	cWW
262	IL_4IOA_092	4IOA	0.5656	2	Multiple bulged bases	X	LSU rRNA	C	2491	G	2492	*	C	2550	G	2553	cWW	cWW
263	IL_4Y4O_273	4Y4O	0.5672	2	Multiple bulged bases	2A	LSU rRNA	C	2512	G	2513	*	C	2571	G	2574	cWW	cWW
264	IL_5U30_002	5U30	0.4876	1	Single bulged G	B	sgRNA	C	3	U	4	*	A	7	G	9	cWW	cWW
265	IL_1S03_001	1S03	0.4253	1	Single bulged U	A	47-MER	C	41	U	42	*	A	6	G	8	cWW	cWW
266	IL_4V9F_088	4V9F	0.4990	2	Multiple bulged bases	0	LSU rRNA	C	2547	C	2548	*	G	2606	G	2609	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*CC	17
GAC*GC	12
CAG*CG	10
GCU*AC	7
GUC*GC	7
CC*GUG	7
CC*GAG	7
GAG*CC	7
UAC*GA	6
GUU*AC	5
UAC*GG	5
UCG*CA	5
UC*GAA	4
CU*AUG	4
AAG*CU	4
CUG*CG	4
UGC*GG	4
CGC*GG	4
CU*AAG	4
GC*GUC	3
GAU*GC	3
GCC*GC	3
CC*GCG	3
GGU*GC	3
UU*GGA	3
GCG*CC	3
CAU*AG	3
UAAA*UG	3
UUC*GG	3
CUC*GG	3
CG*CUG	3
CG*CAG	3
CCA*UG	3
AUU*AU	2
GAC*GU	2
AC*GAU	2
GUA*UC	2
GGA*UU	2
UG*CU	2
GAA*UC	2
UGA*UA	2
GCG*UC	2
UGU*AA	2
CAC*GG	2
AAU*AU	2
UAGC*GG	2
UUUC*GG	2
UGA*UG	2
UC*GUG	2
UAA*UA	2
UUG*CA	2
UCA*UA	2
GG*CAC	2
CGG*CG	2
UAG*CA	2
CG*CACG	2
AGU*AU	1
AU*AAU	1
GC*GAC	1
AAU*GU	1
UU*AUA	1
GGA*UC	1
GGC*GC	1
UC*GUA	1
AU*AGU	1
UUC*GA	1
AC*GUU	1
GGG*UU	1
GUG*UC	1
GCUG*CC	1
UUA*UA	1
GGAA*UC	1
AUG*CU	1
GAUG*CC	1
AAUG*CU	1
AUUG*CU	1
UGAA*UG	1
UAGU*AG	1
CCC*GG	1
UCGU*AA	1
GACU*AC	1
GGUC*GC	1
UUAC*GA	1
UGC*GA	1
CAAC*GG	1
CAUUUGG*CG	1
CGAA*UG	1
UCC*GG	1
UCAA*UG	1
UGG*CG	1
UGAC*GG	1
UU*GGG	1
UU*AUG	1
GUUCG*CC	1
CC*GUUCG	1
GUUG*CC	1
CU*CG	1
UA*UAA	1
GG*CA	1
CU*AAGG	1
UG*CAA	1
CUU*AG	1
CAAA*UG	1
UU*AUAG	1
UU*ACUG	1
UU*AAUG	1
UG*CAAG	1
UA*UACG	1
CG*CCG	1
CU*AGG	1
CC*GUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	63
U*	50
C*	27
G*	27
*A	26
*U	23
*G	6
AA*	5
*C	4
*	4
GA*	4
UU*	4
AG*	3
*AC	3
AU*	2
CU*	1
CG*	1
AC*	1
GU*	1
UA*	1
AUUUG*	1
CA*	1
UUC*	1
*UUC	1
*AG	1
*UA	1
*CU	1
*AU	1
*AA	1
*UC	1

Release history

Release	3.2
Date	2018-09-26
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged A (69)
Single bulged U (48)
(36)
Single bulged G (27)
Single bulged C (26)
Multiple bulged bases (19)
Major groove intercalation (13)
Single bulged A (H) (11)
Single bulged U (H) (7)
Stack outside cWW (4)
Multiple bulged bases (H) (2)
Single bulged G (H) (2)
Major groove platform (1)
Single bulged C (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.04 | Avg 0.42 | Max 1.00

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view

reading 366 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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366 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 25 ms

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Coloring options: Nucleotide numbers

Motif IL_29366.1 Version IL_29366.1 of this group appears in releases 3.2 to 3.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_29366.1 Version IL_29366.1 of this group appears in releases 3.2 to 3.2

Download

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Json