IL_4P6F_096

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_096 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1038

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4P6F|1|RA|C|1004
4P6F|1|RA|C|1005
4P6F|1|RA|C|1006
4P6F|1|RA|C|1007
4P6F|1|RA|C|1008
4P6F|1|RA|A|1009
4P6F|1|RA|A|1010
4P6F|1|RA|G|1011
*
4P6F|1|RA|C|1150
4P6F|1|RA|G|1151

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20