IL_4P6F_103

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4P6F|1|RA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_103 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2365

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4P6F|1|RA|G|1087
4P6F|1|RA|A|1088
4P6F|1|RA|G|1089
4P6F|1|RA|U|1090
4P6F|1|RA|G|1091
*
4P6F|1|RA|C|1100
4P6F|1|RA|U|1101
4P6F|1|RA|C|1102

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain R9

50S ribosomal protein L36