IL_4P6F_140

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4P6F|1|RA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_140 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.0716

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4P6F|1|RA|G|2070
4P6F|1|RA|A|2071
*
4P6F|1|RA|U|2438
4P6F|1|RA|A|2439
4P6F|1|RA|C|2440
4P6F|1|RA|C|2441

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain RD

50S ribosomal protein L2

Chain Z7

T17-GLY-GLY-PRO-LYS-LYS-LYS-LYS-LYS-VAL-GLY-GLY