IL_4P6F_146

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4P6F|1|RA|U|2132, 4P6F|1|RA|G|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_146 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.504

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4P6F|1|RA|C|2129
4P6F|1|RA|U|2130
4P6F|1|RA|G|2131
4P6F|1|RA|U|2132
4P6F|1|RA|G|2133
4P6F|1|RA|A|2134
4P6F|1|RA|A|2135
4P6F|1|RA|C|2136
*
4P6F|1|RA|G|2155
4P6F|1|RA|G|2156
4P6F|1|RA|G|2157
4P6F|1|RA|A|2158
4P6F|1|RA|G|2159

Current chains

Chain RA

23S ribosomal RNA

Nearby chains