IL_4P6F_149

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_149 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.3687

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4P6F|1|RA|U|2401
4P6F|1|RA|C|2402
4P6F|1|RA|C|2403
*
4P6F|1|RA|G|2414
4P6F|1|RA|G|2415

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R6

50S ribosomal protein L33

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15