IL_4P6F_154

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_154 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.2066

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4P6F|1|RA|C|2466
4P6F|1|RA|C|2467
4P6F|1|RA|G|2468
4P6F|1|RA|A|2469
4P6F|1|RA|G|2470
*
4P6F|1|RA|C|2480
4P6F|1|RA|G|2481
4P6F|1|RA|G|2482
4P6F|1|RA|C|2483
4P6F|1|RA|G|2484

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25