IL_4P6F_182

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4P6F|1|XA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_182 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1022

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4P6F|1|XA|G|148
4P6F|1|XA|A|149
4P6F|1|XA|C|150
4P6F|1|XA|A|151
4P6F|1|XA|A|152
4P6F|1|XA|C|153
*
4P6F|1|XA|G|168
4P6F|1|XA|C|169
4P6F|1|XA|U|170
4P6F|1|XA|A|171
4P6F|1|XA|A|172
4P6F|1|XA|U|173
4P6F|1|XA|C|174

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XT

30S ribosomal protein S20