IL_4P6F_208
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4P6F_208 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0901
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4P6F|1|XA|G|887
4P6F|1|XA|G|888
4P6F|1|XA|A|889
4P6F|1|XA|G|890
4P6F|1|XA|U|891
4P6F|1|XA|A|892
4P6F|1|XA|C|893
4P6F|1|XA|G|894
*
4P6F|1|XA|U|905
4P6F|1|XA|G|906
4P6F|1|XA|A|907
4P6F|1|XA|A|908
4P6F|1|XA|A|909
4P6F|1|XA|C|910
Current chains
- Chain XA
- 16S ribosomal RNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XQ
- 30S ribosomal protein S17
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
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