IL_4P6F_225

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_225 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1295

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4P6F|1|XA|C|1303
4P6F|1|XA|G|1304
4P6F|1|XA|G|1305
4P6F|1|XA|A|1306
4P6F|1|XA|U|1307
4P6F|1|XA|U|1308
*
4P6F|1|XA|A|1329
4P6F|1|XA|U|1330
4P6F|1|XA|G|1331
4P6F|1|XA|A|1332
4P6F|1|XA|A|1333
4P6F|1|XA|G|1334

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx