IL_4P6F_251
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4P6F_251 not in the Motif Atlas
- Homologous match to IL_4WF9_019
- Geometric discrepancy: 0.1011
- The information below is about IL_4WF9_019
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.3
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4P6F|1|YA|U|606
4P6F|1|YA|U|607
4P6F|1|YA|A|608
4P6F|1|YA|A|609
4P6F|1|YA|G|609|||A
*
4P6F|1|YA|C|618|||A
4P6F|1|YA|G|619
4P6F|1|YA|G|620
4P6F|1|YA|A|621
4P6F|1|YA|G|622
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YP
- 50S ribosomal protein L15
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