IL_4P70_177

3D structure

PDB id

4P70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4P70|1|XA|U|244, 4P70|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P70_177 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0903

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4P70|1|XA|C|242
4P70|1|XA|A|243
4P70|1|XA|U|244
4P70|1|XA|C|245
4P70|1|XA|A|246
4P70|1|XA|G|247
*
4P70|1|XA|C|277
4P70|1|XA|G|278
4P70|1|XA|A|279
4P70|1|XA|C|280
4P70|1|XA|G|281
4P70|1|XA|A|282
4P70|1|XA|C|283
4P70|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17