IL_4P8Z_003

3D structure

PDB id

4P8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GUGG*CGUAACAUC

Length

13 nucleotides

Bulged bases

4P8Z|1|A|C|91, 4P8Z|1|A|U|93

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47265.1

Basepair signature

cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

Number of instances in this motif group

2

Unit IDs

4P8Z|1|A|G|72
4P8Z|1|A|U|73
4P8Z|1|A|G|74
4P8Z|1|A|G|75
*
4P8Z|1|A|C|86
4P8Z|1|A|G|87
4P8Z|1|A|U|88
4P8Z|1|A|A|89
4P8Z|1|A|A|90
4P8Z|1|A|C|91
4P8Z|1|A|A|92
4P8Z|1|A|U|93
4P8Z|1|A|C|94

Current chains

Chain A

Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1

Nearby chains