IL_4P95_001

3D structure

PDB id

4P95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme)

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UC*GGUUGAACACUUAAUUGGGUUA

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67834.1

Basepair signature

cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW

Number of instances in this motif group

1

Unit IDs

4P95|1|A|U|3
4P95|1|A|C|4
*
4P95|1|A|G|263
4P95|1|A|G|264
4P95|1|A|U|265
4P95|1|A|U|266
4P95|1|A|G|267
4P95|1|A|A|268
4P95|1|A|A|269
4P95|1|A|C|270
4P95|1|A|A|271
4P95|1|A|C|272
4P95|1|A|U|273
4P95|1|A|U|274
4P95|1|A|A|275
4P95|1|A|A|276
4P95|1|A|U|277
4P95|1|A|U|278
4P95|1|A|G|279
4P95|1|A|G|280
4P95|1|A|G|281
4P95|1|A|U|282
4P95|1|A|U|283
4P95|1|A|A|284

Current chains

Chain A

RNA (192-MER)

Nearby chains