IL_4P9R_001

3D structure

PDB id

4P9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UC*GGUUGAACACUUAAUUGGGUUA

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51572.1

Basepair signature

cWW-R-R-R-R-R-R-tWS-R-R-R-R-R-R-R-R-R-R-R-R-cWW

Number of instances in this motif group

1

Unit IDs

4P9R|1|A|U|3
4P9R|1|A|C|4
*
4P9R|1|A|G|263
4P9R|1|A|G|264
4P9R|1|A|U|265
4P9R|1|A|U|266
4P9R|1|A|G|267
4P9R|1|A|A|268
4P9R|1|A|A|269
4P9R|1|A|C|270
4P9R|1|A|A|271
4P9R|1|A|C|272
4P9R|1|A|U|273
4P9R|1|A|U|274
4P9R|1|A|A|275
4P9R|1|A|A|276
4P9R|1|A|U|277
4P9R|1|A|U|278
4P9R|1|A|G|279
4P9R|1|A|G|280
4P9R|1|A|G|281
4P9R|1|A|U|282
4P9R|1|A|U|283
4P9R|1|A|A|284

Current chains

Chain A

RNA (189-MER)

Nearby chains