IL_4P9R_003

3D structure

PDB id

4P9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGG*CGUAACAUC

Length

13 nucleotides

Bulged bases

4P9R|1|A|C|309, 4P9R|1|A|U|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03362.1

Basepair signature

cWW-tSS-tWW-L-tSH-R-R-cWW

Number of instances in this motif group

2

Unit IDs

4P9R|1|A|G|290
4P9R|1|A|U|291
4P9R|1|A|G|292
4P9R|1|A|G|293
*
4P9R|1|A|C|304
4P9R|1|A|G|305
4P9R|1|A|U|306
4P9R|1|A|A|307
4P9R|1|A|A|308
4P9R|1|A|C|309
4P9R|1|A|A|310
4P9R|1|A|U|311
4P9R|1|A|C|312

Current chains

Chain A

RNA (189-MER)

Nearby chains